Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298

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Filters

Gene
miRNA
Score
chr22-38_28785274-29006793.1
hsa-miR-298
1.000

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52539-52553
0.012
2
7mer
210128-210152
0.011
9
6mer
193-212
0.007
2
7mer
13055-13081
0.007
8
8mer
111195-111212
0.006
0
7mer
130485-130503
0.006
2
8mer
139710-139724
0.006
1
8mer
61561-61587
0.006
1
8mer
2436-2457
0.006
2
8mer
96627-96648
0.005
1
8mer
30684-30709
0.005
2
7mer
54990-55015
0.005
2
8mer
113794-113809
0.005
1
7mer
143917-143936
0.005
2
7mer
211478-211505
0.005
0
7mer
99175-99180
0.005
0
7mer
135667-135692
0.004
4
7mer
175612-175636
0.004
0
7mer
208224-208241
0.004
0
7mer
255374-255399
0.004
1
7mer
36767-36792
0.004
0
7mer
10276-10296
0.004
Not Conserved
7mer
15416-15442
0.004
1
8mer
179937-179962
0.004
2
7mer
218895-218913
0.004
1
7mer
35124-35147
0.004
1
7mer
245243-245261
0.004
0
7mer
151465-151479
0.004
3
7mer
22783-22802
0.004
6
7mer
247078-247103
0.004
0
6mer
145621-145640
0.004
6
7mer
153118-153136
0.004
2
6mer
82805-82824
0.003
4
6mer
53144-53168
0.003
7
7mer
161075-161099
0.003
0
9mer
88962-88981
0.003
1
7mer
90124-90147
0.003
0
7mer
3742-3759
0.003
4
7mer
183316-183332
0.003
1
6mer
207225-207236
0.003
9
7mer
26521-26544
0.003
1
7mer
96460-96471
0.003
0
7mer
69811-69824
0.003
2
7mer
1323-1350
0.003
1
7mer
165474-165496
0.003
1
7mer
80046-80061
0.002
0
6mer
51970-51987
0.002
3
6mer
33548-33573
0.002
2
6mer
94098-94112
0.002
4
6mer
141736-141761
0.002
2
7mer
131154-131179
0.002
Not Conserved
6mer
133325-133341
0.002
2
8mer
112889-112909
0.002
0
6mer
112188-112206
0.002
4
6mer
211718-211736
0.002
1
6mer
128248-128275
0.002
1
7mer
82252-82275
0.002
0
6mer
178207-178225
0.002
1
7mer
90490-90513
0.002
1
6mer
91825-91842
0.002
2
6mer
105163-105182
0.002
2
7mer
225941-225964
0.002
0
6mer
172156-172175
0.002
3
6mer
167078-167105
0.002
2
6mer
131015-131038
0.002
2
6mer
1026-1037
0.002
2
6mer
116483-116507
0.002
5
6mer
202674-202693
0.002
0
6mer
178454-178472
0.002
2
6mer
3018-3045
0.002
2
6mer
38120-38130
0.002
3
7mer
30898-30921
0.002
1
6mer
106233-106244
0.002
1
6mer
45885-45895
0.002
3
6mer
124160-124173
0.002
5
6mer
107722-107741
0.002
2
6mer
53748-53764
0.002
3
6mer
216225-216252
0.002
3
6mer
171751-171778
0.001
0
6mer
235988-236004
0.001
1
6mer
154146-154172
0.001
1
6mer
86729-86742
0.001
2
6mer
70469-70493
0.001
1
6mer
69375-69401
0.001
3
6mer
118721-118738
0.001
0
6mer
184846-184858
0.001
1
8mer
236178-236192
0.001
0
7mer
127496-127510
0.001
1
7mer
201247-201259
0.001
Not Conserved
6mer
66429-66447
0.001
2
6mer
233046-233057
0.001
1
6mer
43406-43429
0.001
1
6mer
32666-32674
0.001
1
6mer
48346-48368
0.001
1
6mer
42500-42515
0.001
1
6mer
174804-174829
0.001
0
6mer
243129-243152
0.001
0
6mer
245337-245355
0.001
0
6mer
261545-261562
0.001
1
6mer
22631-22653
0.001
4
6mer
122062-122087
0.001
1
6mer
222381-222396
0.001
1
6mer
94238-94265
0.001
0
7mer
236057-236084
0.001
0
6mer
60347-60374
0.001
0
6mer
182964-182989
0.001
1
6mer
104766-104788
0.001
1
6mer
95101-95128
0.001
1
6mer
205365-205381
0.001
1
6mer
265395-265416
0.001
2
6mer
224150-224171
0.001
0
6mer
82925-82944
0.001
1
7mer
53193-53218
0.001
1
6mer
215848-215870
0.001
2
6mer
187735-187749
0.001
Not Conserved
6mer
82839-82860
0.000
1
6mer
236107-236131
0.000
0
6mer
236178-236205
0.000
2
AC006548.28
hsa-miR-298
1.000

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-423
0.016
1
8mer
28071-28091
0.011
1
8mer
74611-74638
0.009
0
8mer
46106-46129
0.008
Not Conserved
7mer
82950-82976
0.006
0
7mer
42522-42541
0.006
3
7mer
63578-63591
0.005
0
7mer
26318-26333
0.005
1
7mer
33012-33025
0.005
1
7mer
47541-47567
0.004
Not Conserved
8mer
3659-3676
0.004
1
7mer
53719-53738
0.003
Not Conserved
7mer
77195-77211
0.003
0
7mer
24688-24709
0.003
1
6mer
39070-39090
0.003
3
7mer
8691-8708
0.002
1
6mer
27870-27885
0.002
1
6mer
71315-71332
0.002
0
6mer
73540-73561
0.002
0
6mer
22333-22353
0.002
2
6mer
70408-70425
0.002
0
7mer
17262-17287
0.002
0
8mer
77166-77185
0.002
0
6mer
76965-76991
0.002
0
6mer
28868-28879
0.002
1
9mer
42496-42512
0.002
Not Conserved
6mer
27584-27602
0.002
0
6mer
56013-56026
0.002
Not Conserved
6mer
54689-54712
0.002
1
6mer
56958-56976
0.002
1
7mer
45625-45641
0.002
Not Conserved
6mer
32511-32527
0.002
1
6mer
25502-25524
0.001
1
6mer
52117-52129
0.001
Not Conserved
6mer
45190-45206
0.001
1
6mer
36510-36530
0.001
2
7mer
75846-75872
0.001
0
6mer
2674-2699
0.001
1
6mer
26728-26749
0.001
1
6mer
34718-34732
0.001
1
7mer
38665-38686
0.001
0
6mer
54513-54528
0.001
Not Conserved
6mer
16626-16636
0.001
0
6mer
20517-20541
0.001
0
6mer
55714-55735
0.001
1
6mer
59397-59413
0.001
1
7mer
55581-55596
0.001
Not Conserved
6mer
17571-17595
0.001
1
6mer
43082-43101
0.001
3
6mer
6749-6767
0.001
2
6mer
23342-23362
0.001
1
6mer
24305-24331
0.001
0
6mer
46517-46527
0.001
Not Conserved
7mer
17098-17123
0.001
1
6mer
26115-26133
0.001
Not Conserved
6mer
11515-11525
0.001
0
6mer
2392-2412
0.001
1
6mer
14380-14391
0.001
0
6mer
17470-17491
0.001
0
7mer
17180-17205
0.001
0
6mer
23261-23278
0.001
Not Conserved
7mer
74595-74619
0.001
0
6mer
23692-23714
0.001
1
6mer
24291-24316
0.000
1
6mer
45616-45638
0.000
Not Conserved
RP11-495P10.8
hsa-miR-298
0.999

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-458
0.064
0
7mer
619-644
0.041
0
7mer
333-348
0.026
0
LINC01517
hsa-miR-298
0.999

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-348
0.064
0
8mer
460-475
0.058
0
LOC100128885
hsa-miR-298
0.998

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-60
0.022
0
7mer
4331-4358
0.021
0
8mer
3625-3642
0.014
0
7mer
976-1000
0.012
0
7mer
756-775
0.009
0
6mer
4248-4272
0.009
0
7mer
1514-1536
0.008
0
6mer
136-160
0.005
0
7mer
3027-3052
0.005
0
7mer
3415-3441
0.005
0
6mer
3701-3726
0.004
0
XLOC_012894
hsa-miR-298
0.998

Gene Details
Chromosome: chr18
Transcript: TCONS_00026576
Biotype: transcript isomorph
Gene id: XLOC_012894
Gene Name: XLOC_012894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-480
0.056
1
8mer
3885-3911
0.028
0
7mer
3323-3336
0.013
1
7mer
1907-1933
0.006
1
7mer
1391-1409
0.005
0
6mer
3731-3754
0.004
0
RP11-157B13.7
hsa-miR-298
0.996

Gene Details
Chromosome: 19
Transcript: ENST00000599810
Biotype: lincRNA
Gene id: ENSG00000267872
Gene Name: RP11-157B13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-52
0.040
0
7mer
169-188
0.033
0
7mer
2051-2068
0.016
Not Conserved
8mer
1270-1288
0.007
Not Conserved
7mer
1336-1353
0.003
Not Conserved
6mer
1478-1497
0.003
Not Conserved
XLOC_005997
hsa-miR-298
0.995

Gene Details
Chromosome: chr7
Transcript: TCONS_00013360
Biotype: transcript isomorph
Gene id: XLOC_005997
Gene Name: XLOC_005997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-193
0.053
8
8mer
269-285
0.046
5
DLX6-AS1
hsa-miR-298
0.995

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15312-15326
0.029
7
8mer
14646-14668
0.020
1
7mer
141-168
0.012
4
8mer
10513-10538
0.012
8
7mer
3639-3658
0.005
0
7mer
5848-5873
0.005
1
7mer
1614-1623
0.004
2
7mer
3320-3337
0.002
Not Conserved
6mer
14426-14445
0.002
1
6mer
10722-10733
0.002
3
6mer
12073-12088
0.002
3
6mer
12303-12320
0.002
2
RP11-46H11.3
hsa-miR-298
0.995

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2711-2732
0.070
0
7mer
896-915
0.012
0
6mer
2160-2177
0.008
0
6mer
1460-1477
0.006
0
XLOC_002258
hsa-miR-298
0.994

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
298-323
0.068
1
7mer
2166-2193
0.017
1
6mer
1540-1562
0.010
1
XLOC_009140
hsa-miR-298
0.993

Gene Details
Chromosome: chr11
Transcript: TCONS_00019094
Biotype: transcript isomorph
Gene id: XLOC_009140
Gene Name: XLOC_009140
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-161
0.073
4
7mer
339-354
0.020
2
KCNQ1OT1
hsa-miR-298
0.993

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13206-13226
0.009
1
8mer
56877-56897
0.008
1
7mer
6769-6783
0.006
1
7mer
9693-9715
0.006
1
8mer
26840-26866
0.005
0
7mer
42154-42170
0.005
1
7mer
63117-63140
0.004
1
8mer
88171-88190
0.004
1
6mer
43852-43878
0.003
7
7mer
16074-16100
0.003
1
8mer
64011-64034
0.003
1
6mer
58135-58157
0.003
5
7mer
46102-46118
0.002
1
6mer
69854-69874
0.002
1
9mer
62248-62270
0.002
1
7mer
89807-89830
0.002
1
6mer
90262-90282
0.002
1
6mer
74555-74567
0.002
2
6mer
71142-71158
0.002
0
6mer
89689-89713
0.002
4
6mer
31946-31958
0.002
0
6mer
36810-36831
0.001
0
6mer
55060-55085
0.001
1
7mer
45366-45388
0.001
1
6mer
47498-47515
0.001
1
6mer
75491-75514
0.001
0
6mer
91583-91605
0.001
Not Conserved
6mer
59130-59146
0.001
0
6mer
70511-70529
0.001
1
6mer
61752-61773
0.001
1
6mer
31190-31216
0.001
0
6mer
37751-37768
0.001
0
6mer
54903-54929
0.001
0
6mer
36776-36798
0.000
0
RP11-509A17.3
hsa-miR-298
0.992

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-509
0.069
1
6mer
13-38
0.014
1
6mer
203-219
0.008
1
CTD-2542C24.8
hsa-miR-298
0.992

Gene Details
Chromosome: 19
Transcript: ENST00000598137
Biotype: lincRNA
Gene id: ENSG00000268326
Gene Name: CTD-2542C24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-58
0.057
0
7mer
110-127
0.033
0
LINC01505
hsa-miR-298
0.992

Gene Details
Chromosome: 9
Transcript: ENST00000444985
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-141
0.084
12
6mer
934-945
0.004
4
XLOC_007089
hsa-miR-298
0.991

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6729-6753
0.014
0
7mer
9193-9219
0.011
0
7mer
554-568
0.011
Not Conserved
7mer
9062-9087
0.009
0
8mer
10480-10506
0.008
0
8mer
4208-4235
0.004
0
7mer
10350-10372
0.004
0
7mer
4109-4126
0.004
0
7mer
4342-4355
0.003
Not Conserved
7mer
4476-4498
0.003
0
7mer
10382-10395
0.003
Not Conserved
8mer
4682-4707
0.002
Not Conserved
7mer
4147-4166
0.002
0
8mer
5735-5757
0.002
Not Conserved
7mer
5703-5725
0.001
Not Conserved
6mer
9160-9182
0.001
0
6mer
5046-5073
0.001
Not Conserved
6mer
10448-10460
0.001
0
6mer
5819-5836
0.001
Not Conserved
6mer
5442-5469
0.001
Not Conserved
7mer
5771-5794
0.001
Not Conserved
7mer
5803-5827
0.001
Not Conserved
AL022344.7
hsa-miR-298
0.991

Gene Details
Chromosome: 10
Transcript: ENST00000568976
Biotype: lincRNA
Gene id: ENSG00000259869
Gene Name: AL022344.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-133
0.087
0
AC025811.3
hsa-miR-298
0.989

Gene Details
Chromosome: 19
Transcript: ENST00000604312
Biotype: lincRNA
Gene id: ENSG00000270947
Gene Name: AC025811.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-176
0.085
0
RP6-91H8.2
hsa-miR-298
0.989

Gene Details
Chromosome: 14
Transcript: ENST00000561794
Biotype: lincRNA
Gene id: ENSG00000259907
Gene Name: RP6-91H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-562
0.064
1
7mer
575-590
0.021
1
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